3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUAGACGAC
Length
9 nucleotides
Bulged bases
6P5K|1|5|U|4976
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5K_114 not in the Motif Atlas
Homologous match to HL_8C3A_071
Geometric discrepancy: 0.1265
The information below is about HL_8C3A_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.4
Basepair signature
cWW-cSW-F-F-F-cWW
Number of instances in this motif group
9

Unit IDs

6P5K|1|5|G|4975
6P5K|1|5|U|4976
6P5K|1|5|A|4977
6P5K|1|5|G|4978
6P5K|1|5|A|4979
6P5K|1|5|C|4980
6P5K|1|5|G|4981
6P5K|1|5|A|4982
6P5K|1|5|C|4983

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AB
uL3
Chain AP
uL22
Chain Ad
eL31

Coloring options:


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