HL_6P5K_114
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 6P5K|1|5|U|4976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5K_114 not in the Motif Atlas
- Homologous match to HL_8C3A_071
- Geometric discrepancy: 0.1265
- The information below is about HL_8C3A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.4
- Basepair signature
- cWW-cSW-F-F-F-cWW
- Number of instances in this motif group
- 9
Unit IDs
6P5K|1|5|G|4975
6P5K|1|5|U|4976
6P5K|1|5|A|4977
6P5K|1|5|G|4978
6P5K|1|5|A|4979
6P5K|1|5|C|4980
6P5K|1|5|G|4981
6P5K|1|5|A|4982
6P5K|1|5|C|4983
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AP
- uL22
- Chain Ad
- eL31
Coloring options: