HL_6P5K_126

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

6P5K|1|2|U|1300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|2|G|1294
6P5K|1|2|A|1295
6P5K|1|2|U|1296
6P5K|1|2|U|1297
6P5K|1|2|G|1298
6P5K|1|2|A|1299
6P5K|1|2|U|1300
6P5K|1|2|A|1301
6P5K|1|2|G|1302
6P5K|1|2|C|1303
6P5K|1|2|U|1304
6P5K|1|2|C|1305

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain Q

uS19

Chain e

eS29

Chain g

eS31