HL_6P5K_133

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGCCGGGCUC

Length

11 nucleotides

Bulged bases

6P5K|1|5|C|4110

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5K|1|5|G|4097
6P5K|1|5|A|4098
6P5K|1|5|G|4099
6P5K|1|5|C|4100
6P5K|1|5|C|4101
6P5K|1|5|G|4107
6P5K|1|5|G|4108
6P5K|1|5|G|4109
6P5K|1|5|C|4110
6P5K|1|5|U|4111
6P5K|1|5|C|4112

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AG

eL8

Chain Ag

eL34

Chain C

eS1