HL_6P5K_134
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAAACGGGGCGGCCGGAAAGGGGGCCGCCCUCUCGCC
- Length
- 38 nucleotides
- Bulged bases
- 6P5K|1|5|C|4895, 6P5K|1|5|A|4910, 6P5K|1|5|A|4911, 6P5K|1|5|C|4921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5K|1|5|G|4890
6P5K|1|5|G|4891
6P5K|1|5|A|4892
6P5K|1|5|A|4893
6P5K|1|5|A|4894
6P5K|1|5|C|4895
6P5K|1|5|G|4896
6P5K|1|5|G|4897
6P5K|1|5|G|4898
6P5K|1|5|G|4899
6P5K|1|5|C|4902
6P5K|1|5|G|4903
6P5K|1|5|G|4904
6P5K|1|5|C|4905
6P5K|1|5|C|4906
6P5K|1|5|G|4907
6P5K|1|5|G|4908
6P5K|1|5|A|4909
6P5K|1|5|A|4910
6P5K|1|5|A|4911
6P5K|1|5|G|4912
6P5K|1|5|G|4913
6P5K|1|5|G|4914
6P5K|1|5|G|4915
6P5K|1|5|G|4916
6P5K|1|5|C|4917
6P5K|1|5|C|4918
6P5K|1|5|G|4919
6P5K|1|5|C|4920
6P5K|1|5|C|4921
6P5K|1|5|C|4922
6P5K|1|5|U|4923
6P5K|1|5|C|4924
6P5K|1|5|U|4925
6P5K|1|5|C|4926
6P5K|1|5|G|4927
6P5K|1|5|C|4928
6P5K|1|5|C|4929
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AE
- eL6
- Chain AM
- L14e
- Chain AO
- uL13
Coloring options: