HL_6P5N_027

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

6P5N|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_027 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.1623

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6P5N|1|2|G|1054
6P5N|1|2|A|1055
6P5N|1|2|U|1056
6P5N|1|2|C|1057
6P5N|1|2|A|1058
6P5N|1|2|G|1059
6P5N|1|2|A|1060
6P5N|1|2|U|1061
6P5N|1|2|A|1062
6P5N|1|2|C|1063
6P5N|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain P

uS11