HL_6P5N_028

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

6P5N|1|2|C|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_028 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.2673

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6P5N|1|2|A|1113
6P5N|1|2|U|1114
6P5N|1|2|U|1115
6P5N|1|2|C|1116
6P5N|1|2|C|1117
6P5N|1|2|C|1118
6P5N|1|2|A|1119
6P5N|1|2|U|1120

Current chains

Chain 2

18S rRNA

Nearby chains

Chain C

eS1

Chain c

eS27