HL_6P5N_054

3D structure

PDB id

6P5N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGGGCCCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6P5N_054 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3518

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

6P5N|1|5|G|756
6P5N|1|5|G|757
6P5N|1|5|G|758
6P5N|1|5|G|759
6P5N|1|5|G|760
6P5N|1|5|C|903
6P5N|1|5|C|904
6P5N|1|5|C|905
6P5N|1|5|C|906

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AH

uL6

Chain AM

L14e

Chain AS

eL20