3D structure

PDB id
6P5N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUUCGCC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6P5N_083 not in the Motif Atlas
Homologous match to HL_8C3A_038
Geometric discrepancy: 0.5101
The information below is about HL_8C3A_038
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75033.1
Basepair signature
cWW-cWW-F-F-F
Number of instances in this motif group
3

Unit IDs

6P5N|1|5|G|2664
6P5N|1|5|U|2665
6P5N|1|5|U|2666
6P5N|1|5|C|2667
6P5N|1|5|G|2668
6P5N|1|5|C|2669
6P5N|1|5|C|2670

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AR
eL19
Chain Ap
eL43

Coloring options:


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