HL_6P5N_094
3D structure
- PDB id
- 6P5N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with a single translocated Israeli Acute Paralysis Virus IRES and eRF1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6P5N|1|5|A|3760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6P5N_094 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.192
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6P5N|1|5|G|3757
6P5N|1|5|U|3758
6P5N|1|5|A|3759
6P5N|1|5|A|3760
6P5N|1|5|C|3761
6P5N|1|5|U|3762
6P5N|1|5|A|3763
6P5N|1|5|U|3764
6P5N|1|5|G|3765
6P5N|1|5|A|3766
6P5N|1|5|C|3767
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Aq
- Eukaryotic peptide chain release factor subunit 1
Coloring options: