HL_6PC5_052

3D structure

PDB id

6PC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 46 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

6PC5|1|I|A|2211, 6PC5|1|I|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC5_052 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.105

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6PC5|1|I|G|2209
6PC5|1|I|U|2210
6PC5|1|I|A|2211
6PC5|1|I|A|2212
6PC5|1|I|U|2213
6PC5|1|I|C|2214
6PC5|1|I|C|2215

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2