HL_6PC6_071

3D structure

PDB id

6PC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 47

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6PC6|1|I|U|958, 6PC6|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC6_071 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1153

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6PC6|1|I|PSU|955
6PC6|1|I|G|956
6PC6|1|I|C|957
6PC6|1|I|U|958
6PC6|1|I|A|959
6PC6|1|I|A|960
6PC6|1|I|C|961
6PC6|1|I|G|962

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA