HL_6PC7_011

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6PC7|1|I|G|329, 6PC7|1|I|A|330, 6PC7|1|I|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC7_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1096

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6PC7|1|I|G|327
6PC7|1|I|U|328
6PC7|1|I|G|329
6PC7|1|I|A|330
6PC7|1|I|C|331
6PC7|1|I|A|332
6PC7|1|I|G|333
6PC7|1|I|C|334
6PC7|1|I|C|335

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4