HL_6PC7_035

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6PC7|1|I|A|1453, 6PC7|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC7_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2166

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PC7|1|I|C|1451
6PC7|1|I|G|1452
6PC7|1|I|A|1453
6PC7|1|I|C|1454
6PC7|1|I|G|1455
6PC7|1|I|G|1456
6PC7|1|I|U|1457
6PC7|1|I|U|1458
6PC7|1|I|G|1459

Current chains

Chain I

23S ribosomal RNA

Nearby chains