HL_6PC7_065

3D structure

PDB id

6PC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 46

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6PC7|1|I|G|2751, 6PC7|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC7_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0823

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6PC7|1|I|C|2745
6PC7|1|I|U|2746
6PC7|1|I|G|2747
6PC7|1|I|A|2748
6PC7|1|I|A|2749
6PC7|1|I|A|2750
6PC7|1|I|G|2751
6PC7|1|I|C|2752
6PC7|1|I|A|2753
6PC7|1|I|U|2754
6PC7|1|I|C|2755
6PC7|1|I|U|2756
6PC7|1|I|A|2757
6PC7|1|I|A|2758
6PC7|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13