HL_6PC8_004

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

6PC8|1|I|U|138, 6PC8|1|I|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_004 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2359

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6PC8|1|I|G|136
6PC8|1|I|U|137
6PC8|1|I|U|138
6PC8|1|I|U|139
6PC8|1|I|C|140
6PC8|1|I|G|141
6PC8|1|I|A|142
6PC8|1|I|C|143

Current chains

Chain I

23S ribosomal RNA

Nearby chains