HL_6PC8_029

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

6PC8|1|I|C|1172, 6PC8|1|I|U|1174, 6PC8|1|I|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_029 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3488

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6PC8|1|I|G|1168
6PC8|1|I|A|1169
6PC8|1|I|C|1170
6PC8|1|I|G|1171
6PC8|1|I|C|1172
6PC8|1|I|U|1173
6PC8|1|I|U|1174
6PC8|1|I|A|1175
6PC8|1|I|U|1176
6PC8|1|I|G|1177
6PC8|1|I|C|1178
6PC8|1|I|G|1179
6PC8|1|I|U|1180
6PC8|1|I|U|1181

Current chains

Chain I

23S ribosomal RNA

Nearby chains