HL_6PC8_072

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6PC8|1|I|U|958, 6PC8|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_072 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1651

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6PC8|1|I|PSU|955
6PC8|1|I|G|956
6PC8|1|I|C|957
6PC8|1|I|U|958
6PC8|1|I|A|959
6PC8|1|I|A|960
6PC8|1|I|C|961
6PC8|1|I|G|962

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA