HL_6PC8_074

3D structure

PDB id

6PC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40q

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PC8_074 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.4206

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6PC8|1|I|G|2304
6PC8|1|I|U|2305
6PC8|1|I|C|2306
6PC8|1|I|G|2307
6PC8|1|I|G|2308
6PC8|1|I|A|2309
6PC8|1|I|C|2310
6PC8|1|I|A|2311
6PC8|1|I|U|2312

Current chains

Chain I

23S ribosomal RNA

Nearby chains