HL_6PCH_012

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

6PCH|1|I|G|386, 6PCH|1|I|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2514

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PCH|1|I|G|381
6PCH|1|I|A|382
6PCH|1|I|C|383
6PCH|1|I|A|384
6PCH|1|I|C|385
6PCH|1|I|G|386
6PCH|1|I|U|387
6PCH|1|I|G|388
6PCH|1|I|G|389
6PCH|1|I|U|390
6PCH|1|I|A|391
6PCH|1|I|U|392
6PCH|1|I|C|393

Current chains

Chain I

23S ribosomal RNA

Nearby chains