HL_6PCH_023

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

6PCH|1|I|A|781, 6PCH|1|I|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_023 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.212

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|G|778
6PCH|1|I|U|779
6PCH|1|I|G|780
6PCH|1|I|A|781
6PCH|1|I|A|782
6PCH|1|I|A|783
6PCH|1|I|G|784
6PCH|1|I|G|785
6PCH|1|I|C|786

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2