HL_6PCH_045

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUAUUAAAAAC

Length

13 nucleotides

Bulged bases

6PCH|1|I|A|1780, 6PCH|1|I|U|1781, 6PCH|1|I|U|1782, 6PCH|1|I|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_045 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2302

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6PCH|1|I|G|1776
6PCH|1|I|U|1777
6PCH|1|I|U|1778
6PCH|1|I|U|1779
6PCH|1|I|A|1780
6PCH|1|I|U|1781
6PCH|1|I|U|1782
6PCH|1|I|A|1783
6PCH|1|I|A|1784
6PCH|1|I|A|1785
6PCH|1|I|A|1786
6PCH|1|I|A|1787
6PCH|1|I|C|1788

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2