HL_6PCH_054

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6PCH|1|I|A|2268, 6PCH|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1209

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6PCH|1|I|C|2264
6PCH|1|I|U|2265
6PCH|1|I|A|2266
6PCH|1|I|A|2267
6PCH|1|I|A|2268
6PCH|1|I|G|2269
6PCH|1|I|A|2270
6PCH|1|I|G|2271
6PCH|1|I|U|2272
6PCH|1|I|A|2273
6PCH|1|I|A|2274
6PCH|1|I|C|2275
6PCH|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains