HL_6PCH_067

3D structure

PDB id

6PCH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUUAAGG

Length

9 nucleotides

Bulged bases

6PCH|1|I|U|2797, 6PCH|1|I|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCH_067 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3305

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6PCH|1|I|C|2794
6PCH|1|I|C|2795
6PCH|1|I|U|2796
6PCH|1|I|U|2797
6PCH|1|I|U|2798
6PCH|1|I|A|2799
6PCH|1|I|A|2800
6PCH|1|I|G|2801
6PCH|1|I|G|2802

Current chains

Chain I

23S ribosomal RNA

Nearby chains