HL_6PCQ_013
3D structure
- PDB id
- 6PCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to VM2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGACCAUC
- Length
- 8 nucleotides
- Bulged bases
- 6PCQ|1|I|G|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6PCQ_013 not in the Motif Atlas
- Homologous match to HL_4WF9_014
- Geometric discrepancy: 0.1132
- The information below is about HL_4WF9_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
6PCQ|1|I|G|410
6PCQ|1|I|G|411
6PCQ|1|I|A|412
6PCQ|1|I|C|413
6PCQ|1|I|C|414
6PCQ|1|I|A|415
6PCQ|1|I|U|416
6PCQ|1|I|C|417
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L15
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