HL_6PCQ_029

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

6PCQ|1|I|C|1172, 6PCQ|1|I|U|1174, 6PCQ|1|I|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_029 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3585

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6PCQ|1|I|G|1168
6PCQ|1|I|A|1169
6PCQ|1|I|C|1170
6PCQ|1|I|G|1171
6PCQ|1|I|C|1172
6PCQ|1|I|U|1173
6PCQ|1|I|U|1174
6PCQ|1|I|A|1175
6PCQ|1|I|U|1176
6PCQ|1|I|G|1177
6PCQ|1|I|C|1178
6PCQ|1|I|G|1179
6PCQ|1|I|U|1180
6PCQ|1|I|U|1181

Current chains

Chain I

23S ribosomal RNA

Nearby chains