HL_6PCQ_060

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6PCQ|1|I|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.161

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6PCQ|1|I|U|2528
6PCQ|1|I|G|2529
6PCQ|1|I|A|2530
6PCQ|1|I|A|2531
6PCQ|1|I|G|2532
6PCQ|1|I|U|2533
6PCQ|1|I|A|2534
6PCQ|1|I|G|2535

Current chains

Chain I

23S ribosomal RNA

Nearby chains