HL_6PCQ_065

3D structure

PDB id

6PCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to VM2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6PCQ|1|I|G|2751, 6PCQ|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCQ_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1015

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6PCQ|1|I|C|2745
6PCQ|1|I|U|2746
6PCQ|1|I|G|2747
6PCQ|1|I|A|2748
6PCQ|1|I|A|2749
6PCQ|1|I|A|2750
6PCQ|1|I|G|2751
6PCQ|1|I|C|2752
6PCQ|1|I|A|2753
6PCQ|1|I|U|2754
6PCQ|1|I|C|2755
6PCQ|1|I|U|2756
6PCQ|1|I|A|2757
6PCQ|1|I|A|2758
6PCQ|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13