HL_6PCR_029

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GACGCUUAUGCGUU

Length

14 nucleotides

Bulged bases

6PCR|1|I|C|1172, 6PCR|1|I|U|1174, 6PCR|1|I|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_029 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3475

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6PCR|1|I|G|1168
6PCR|1|I|A|1169
6PCR|1|I|C|1170
6PCR|1|I|G|1171
6PCR|1|I|C|1172
6PCR|1|I|U|1173
6PCR|1|I|U|1174
6PCR|1|I|A|1175
6PCR|1|I|U|1176
6PCR|1|I|G|1177
6PCR|1|I|C|1178
6PCR|1|I|G|1179
6PCR|1|I|U|1180
6PCR|1|I|U|1181

Current chains

Chain I

23S ribosomal RNA

Nearby chains