HL_6PCR_035

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6PCR|1|I|G|1452, 6PCR|1|I|A|1453, 6PCR|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.2026

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PCR|1|I|C|1451
6PCR|1|I|G|1452
6PCR|1|I|A|1453
6PCR|1|I|C|1454
6PCR|1|I|G|1455
6PCR|1|I|G|1456
6PCR|1|I|U|1457
6PCR|1|I|U|1458
6PCR|1|I|G|1459

Current chains

Chain I

23S ribosomal RNA

Nearby chains