HL_6PCR_060

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6PCR|1|I|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0895

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6PCR|1|I|U|2528
6PCR|1|I|G|2529
6PCR|1|I|A|2530
6PCR|1|I|A|2531
6PCR|1|I|G|2532
6PCR|1|I|U|2533
6PCR|1|I|A|2534
6PCR|1|I|G|2535

Current chains

Chain I

23S ribosomal RNA

Nearby chains