HL_6PCR_065

3D structure

PDB id

6PCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40o

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6PCR|1|I|G|2751, 6PCR|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCR_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0852

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6PCR|1|I|C|2745
6PCR|1|I|U|2746
6PCR|1|I|G|2747
6PCR|1|I|A|2748
6PCR|1|I|A|2749
6PCR|1|I|A|2750
6PCR|1|I|G|2751
6PCR|1|I|C|2752
6PCR|1|I|A|2753
6PCR|1|I|U|2754
6PCR|1|I|C|2755
6PCR|1|I|U|2756
6PCR|1|I|A|2757
6PCR|1|I|A|2758
6PCR|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13