HL_6PCS_031

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_031 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1245

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

6PCS|1|I|G|1281
6PCS|1|I|U|1282
6PCS|1|I|G|1283
6PCS|1|I|A|1284
6PCS|1|I|A|1285
6PCS|1|I|A|1286
6PCS|1|I|A|1287
6PCS|1|I|G|1288
6PCS|1|I|C|1289

Current chains

Chain I

23S ribosomal RNA

Nearby chains