HL_6PCS_053

3D structure

PDB id

6PCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound 40e

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6PCS|1|I|A|2268, 6PCS|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PCS_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0788

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6PCS|1|I|C|2264
6PCS|1|I|U|2265
6PCS|1|I|A|2266
6PCS|1|I|A|2267
6PCS|1|I|A|2268
6PCS|1|I|G|2269
6PCS|1|I|A|2270
6PCS|1|I|G|2271
6PCS|1|I|U|2272
6PCS|1|I|A|2273
6PCS|1|I|A|2274
6PCS|1|I|C|2275
6PCS|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains