3D structure

PDB id
6PCS (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosome bound to compound 40e
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAAUGGAAG
Length
10 nucleotides
Bulged bases
6PCS|1|I|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6PCS_058 not in the Motif Atlas
Homologous match to HL_5J7L_192
Geometric discrepancy: 0.1029
The information below is about HL_5J7L_192
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53454.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

6PCS|1|I|U|2404
6PCS|1|I|G|2405
6PCS|1|I|A|2406
6PCS|1|I|A|2407
6PCS|1|I|U|2408
6PCS|1|I|G|2409
6PCS|1|I|G|2410
6PCS|1|I|A|2411
6PCS|1|I|A|2412
6PCS|1|I|G|2413

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15

Coloring options:


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