HL_6PJ6_016
3D structure
- PDB id
- 6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cryo-EM structure of E.coli 50S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGCUUAGGCG
- Length
- 10 nucleotides
- Bulged bases
- 6PJ6|1|I|U|546, 6PJ6|1|I|G|549
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6PJ6_016 not in the Motif Atlas
- Geometric match to HL_3FOZ_004
- Geometric discrepancy: 0.366
- The information below is about HL_3FOZ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_45175.1
- Basepair signature
- cWW-cWS-F-F
- Number of instances in this motif group
- 5
Unit IDs
6PJ6|1|I|C|542
6PJ6|1|I|G|543
6PJ6|1|I|C|544
6PJ6|1|I|U|545
6PJ6|1|I|U|546
6PJ6|1|I|A|547
6PJ6|1|I|G|548
6PJ6|1|I|G|549
6PJ6|1|I|C|550
6PJ6|1|I|G|551
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L13
- Chain Z
- 50S ribosomal protein L21
Coloring options: