HL_6PJ6_021

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGUAACACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_021 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.267

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6PJ6|1|I|G|711
6PJ6|1|I|G|712
6PJ6|1|I|G|713
6PJ6|1|I|U|714
6PJ6|1|I|A|715
6PJ6|1|I|A|716
6PJ6|1|I|C|717
6PJ6|1|I|A|718
6PJ6|1|I|C|719
6PJ6|1|I|U|720

Current chains

Chain I

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L2