3D structure

PDB id
6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cryo-EM structure of E.coli 50S
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UUUAGG
Length
6 nucleotides
Bulged bases
6PJ6|1|I|U|827, 6PJ6|1|I|G|830
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6PJ6_024 not in the Motif Atlas
Homologous match to HL_7RQB_025
Geometric discrepancy: 0.0817
The information below is about HL_7RQB_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53619.1
Basepair signature
cWW-F-F
Number of instances in this motif group
11

Unit IDs

6PJ6|1|I|U|826
6PJ6|1|I|U|827
6PJ6|1|I|U|828
6PJ6|1|I|A|829
6PJ6|1|I|G|830
6PJ6|1|I|G|831

Current chains

Chain I
23S rRNA

Nearby chains

Chain T
50S ribosomal protein L15

Coloring options:


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