HL_6PJ6_036

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6PJ6|1|I|A|1453, 6PJ6|1|I|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.0841

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6PJ6|1|I|C|1451
6PJ6|1|I|G|1452
6PJ6|1|I|A|1453
6PJ6|1|I|C|1454
6PJ6|1|I|G|1455
6PJ6|1|I|G|1456
6PJ6|1|I|U|1457
6PJ6|1|I|U|1458
6PJ6|1|I|G|1459

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L17