HL_6PJ6_053

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6PJ6|1|I|A|2268, 6PJ6|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0629

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6PJ6|1|I|C|2264
6PJ6|1|I|U|2265
6PJ6|1|I|A|2266
6PJ6|1|I|A|2267
6PJ6|1|I|A|2268
6PJ6|1|I|G|2269
6PJ6|1|I|A|2270
6PJ6|1|I|G|2271
6PJ6|1|I|U|2272
6PJ6|1|I|A|2273
6PJ6|1|I|A|2274
6PJ6|1|I|C|2275
6PJ6|1|I|G|2276

Current chains

Chain I

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27