HL_6PJ6_057

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_057 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.0765

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6PJ6|1|I|C|2374
6PJ6|1|I|G|2375
6PJ6|1|I|A|2376
6PJ6|1|I|A|2377
6PJ6|1|I|A|2378
6PJ6|1|I|G|2379

Current chains

Chain I

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L18