HL_6PJ6_065

3D structure

PDB id

6PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cryo-EM structure of E.coli 50S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6PJ6|1|I|G|2751, 6PJ6|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PJ6_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.068

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6PJ6|1|I|C|2745
6PJ6|1|I|U|2746
6PJ6|1|I|G|2747
6PJ6|1|I|A|2748
6PJ6|1|I|A|2749
6PJ6|1|I|A|2750
6PJ6|1|I|G|2751
6PJ6|1|I|C|2752
6PJ6|1|I|A|2753
6PJ6|1|I|U|2754
6PJ6|1|I|C|2755
6PJ6|1|I|U|2756
6PJ6|1|I|A|2757
6PJ6|1|I|A|2758
6PJ6|1|I|G|2759

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36