HL_6PMO_001

3D structure

PDB id

6PMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of the Geobacillus kaustophilus glyQ T-box riboswitch discriminator domain in complex with tRNA-Gly

Experimental method

X-RAY DIFFRACTION

Resolution

2.66 Å

Loop

Sequence

CGUUGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PMO_001 not in the Motif Atlas

Geometric match to HL_3SKL_006

Geometric discrepancy: 0.3241

The information below is about HL_3SKL_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6PMO|1|A|C|139
6PMO|1|A|G|140
6PMO|1|A|U|141
6PMO|1|A|U|142
6PMO|1|A|G|144
6PMO|1|A|G|145

Current chains

Chain A

T-box riboswitch discriminator

Nearby chains