HL_6POM_003

3D structure

PDB id

6POM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CUUGCCAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6POM_003 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.3323

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6POM|1|B|C|30
6POM|1|B|U|31
6POM|1|B|U|32
6POM|1|B|G|33
6POM|1|B|C|34
6POM|1|B|C|35
6POM|1|B|A|36
6POM|1|B|A|37
6POM|1|B|G|38

Current chains

Chain B

tRNAGly (75-MER)

Nearby chains

Chain A

T-box leader