6POM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6POM_001 | 1/A/64:76 | No text annotation | geometric HL_4MGN_001 HL_86109.1 | |
| HL_6POM_002 | 1/B/13:21 | tRNA D-loop | homologous HL_4WJ4_001 HL_23048.1 | |
| HL_6POM_004 | 1/B/52:60 | T-loop with 2 stacked bulged bases | homologous HL_5AXM_003 HL_33597.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6POM_003 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6POM_004 | 1/A/154:162, 1/A/177:178 | No text annotation | geometric IL_6PMO_001 IL_45930.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6POM_001 | Kink-turn from T-box riboswitch | ||
| IL_6POM_005 | No text annotation | ||
| IL_6POM_002 | No text annotation | ||
| IL_6POM_003 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_6POM_001 | 1/B/7:10, 1/B/24:26, 1/B/42:48, 1/B/64:65 | tRNA junction | homologous J4_7MRL_001 J4_95067.2 |
Problematic loops
No problematic loops
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