HL_6PPF_010

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6PPF|1|A|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.1505

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

6PPF|1|A|C|349
6PPF|1|A|U|350
6PPF|1|A|G|351
6PPF|1|A|G|352
6PPF|1|A|A|353
6PPF|1|A|A|354
6PPF|1|A|A|355
6PPF|1|A|G|356

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24