HL_6PPF_022

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

6PPF|1|A|A|762

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_022 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.3755

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6PPF|1|A|G|759
6PPF|1|A|G|760
6PPF|1|A|U|761
6PPF|1|A|A|762
6PPF|1|A|A|763
6PPF|1|A|C|764
6PPF|1|A|A|765
6PPF|1|A|C|766

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2