HL_6PPF_023

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUUGAAAAG

Length

10 nucleotides

Bulged bases

6PPF|1|A|U|794, 6PPF|1|A|A|798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_023 not in the Motif Atlas

Homologous match to HL_8VTW_022

Geometric discrepancy: 0.2112

The information below is about HL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6PPF|1|A|C|791
6PPF|1|A|G|792
6PPF|1|A|U|793
6PPF|1|A|U|794
6PPF|1|A|G|795
6PPF|1|A|A|796
6PPF|1|A|A|797
6PPF|1|A|A|798
6PPF|1|A|A|799
6PPF|1|A|G|800

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32

Chain d

50S ribosomal protein L34