HL_6PPF_027

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

6PPF|1|A|U|1004, 6PPF|1|A|G|1007

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1967

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6PPF|1|A|U|1001
6PPF|1|A|G|1002
6PPF|1|A|A|1003
6PPF|1|A|U|1004
6PPF|1|A|A|1005
6PPF|1|A|A|1006
6PPF|1|A|G|1007
6PPF|1|A|A|1008

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA