HL_6PPF_030

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_030 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.4459

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|G|1137
6PPF|1|A|C|1138
6PPF|1|A|G|1139
6PPF|1|A|U|1140
6PPF|1|A|A|1141
6PPF|1|A|A|1142
6PPF|1|A|U|1143
6PPF|1|A|A|1144
6PPF|1|A|G|1145
6PPF|1|A|C|1146

Current chains

Chain A

23S rRNA

Nearby chains