HL_6PPF_033

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUGAGAAUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_033 not in the Motif Atlas

Geometric match to HL_1P6V_002

Geometric discrepancy: 0.3243

The information below is about HL_1P6V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6PPF|1|A|G|1319
6PPF|1|A|G|1320
6PPF|1|A|U|1321
6PPF|1|A|G|1322
6PPF|1|A|A|1323
6PPF|1|A|G|1324
6PPF|1|A|A|1325
6PPF|1|A|A|1326
6PPF|1|A|U|1327
6PPF|1|A|C|1328
6PPF|1|A|C|1329

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32